This decision was reached at the end of a week-long 30th Meeting of the Sectoral Council of Ministers responsible for EAC Affairs and Planning (SCMEACP), which ended over the weekend at the EAC Headquarters in Arusha.
It comes at a time when, again, the EAC Secretariat and other organs and institutions of the bloc are grappling with financial difficulties, a situation worsened by the fact that some partner states continuously default on the payment of membership contributions.
Last week, the East African Legislative Assembly tasked the Council of Ministers, the central decision-making and governing organ of the EAC, to urgently address the issue of partner states that defaulting on their membership contributions.
Each year, every country is supposed to remit $8.3 million, totaling to $49.8 million.
The money is used to fund activities of key organs and institutions of the bloc, including the Secretariat, EALA, and the East African Court of Justice.
Amb. Olivier Nduhungirehe, Rwanda's Minister of State in charge of the East African Community, who chaired the extraordinary meeting in Arusha, on Saturday told Sunday Times that a report of current contributions for the fiscal year 2019/20 shows that only Uganda, Rwanda, and Tanzania paid some money.
Nduhungirehe said: "For now, Uganda has paid 72 percent of this contribution, which is around $6 million. Rwanda paid 14 percent; $1.2million, and Tanzania paid 13 percent which is $1million. Other partner states, meaning the Republic of Burundi, the Republic of Kenya, the Republic of South Sudan, are yet to pay for this fiscal year."
"But we still have arrears to be paid by the Republic of South Sudan; $19 million from previous fiscal years, the Republic of Burundi has to pay $3.9 million of arrears, and then the Republic of Kenya also has a small amount of arrears of $160,000."
Nduhungirehe said the meeting was informed by the Secretariat that South Sudan "may have paid" $3million of its arrears.
The hope, he said, is that the trend of paying up continues. They set November 15 this year as the deadline for countries to finish paying their remaining arrears.
For some years, there has been talk in the EAC corridors that the bloc could follow in the footsteps of the African Union in its quest to find an alternative financing mechanism.
During the 2016 AU Summit in Kigali, African leaders adopted a self-financing mechanism, proposed by former African Development Bank President Donald Kaberuka. The AU model aims to raise $1.2 billion annually to reduce heavy dependence on external partners to finance Africa's development projects.
Nduhungirehe said: "We decided that we should fast-track the process for an alternative funding mechanism because this issue of contributions by partner states will continue if we, as partner states continue to pay the same amounts of contributions yet we don't have the same economic size."
"There is a process now which is with the Ministers of Finance of the EAC to find alternative funding mechanisms. There are several options and proposals including a levy on imports basing on the model of what was done by the African Union."
Nduhungirehe explained that the meeting in Arusha requested that regional ministers in charge of EAC affairs follow up on the matter so that the process is concluded.